Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00283.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4351
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:704 original size:69 final size:71

Alignment explanation


    Indices: 623--761  Score: 228
    Period size: 71  Copynumber: 2.0  Consensus size: 71

        613 TATGCCGATC

                                                          *                 *
        623 ATTGAATCTCAAAAGTGTGT-AAATTACTTTC-TTTACTGTTTCATTAAGTGATTTTAAACGCCT
          1 ATTGAATCTCAAAAGTGTGTAAAATTACTTTCTTTTACTGTTTCATGAAGTGATTTTAAACGCCC

                  
        686 TTTATA
         66 TTTATA

                                                             *         *     
        692 ATTGAATCTCAAAAGTGTGTAAAATTACTTTCTTTTACTGTTTCATGAATTGATTTTAATCGCCC
          1 ATTGAATCTCAAAAGTGTGTAAAATTACTTTCTTTTACTGTTTCATGAAGTGATTTTAAACGCCC

                 
        757 TTTAT
         66 TTTAT

        762 GGATTTAGGG


Statistics
Matches: 64,  Mismatches: 4, Indels: 2
        0.91            0.06        0.03

Matches are distributed among these distances:
  69   20  0.31
  70   11  0.17
  71   33  0.52

ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45


Consensus pattern (71 bp):   
ATTGAATCTCAAAAGTGTGTAAAATTACTTTCTTTTACTGTTTCATGAAGTGATTTTAAACGCCC
TTTATA

Done.