Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00289.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1932
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:44 original size:5 final size:5

Alignment explanation


    Indices: 34--58  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

         24 TAGTAAATTA

                                         
         34 CCTTC CCTTC CCTTC CCTTC CCTTC
          1 CCTTC CCTTC CCTTC CCTTC CCTTC

         59 GCACAACTGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40


Consensus pattern (5 bp):   
CCTTC

Found at i:94 original size:5 final size:5

Alignment explanation


    Indices: 86--113  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

         76 TTTATACTGT

                                             
         86 ACCAA ACCAA ACCAA ACCAA ACCAA ACC
          1 ACCAA ACCAA ACCAA ACCAA ACCAA ACC

        114 GAAGGGGCCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00


Consensus pattern (5 bp):   
ACCAA

Done.