Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00290.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:373 original size:15 final size:15

Alignment explanation


    Indices: 353--381  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        343 TCGTCCTCAG

                           
        353 CCTCTCCTTCATCTC
          1 CCTCTCCTTCATCTC

                          
        368 CCTCTCCTTCATCT
          1 CCTCTCCTTCATCT

        382 TCTTTGTCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.07, C:0.52, G:0.00, T:0.41


Consensus pattern (15 bp):   
CCTCTCCTTCATCTC
Done.