Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00294.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1257
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1113 original size:21 final size:20

Alignment explanation


    Indices: 1087--1131  Score: 72
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       1077 CAACGTGGCA

                                
       1087 AGTTAACTGGCCACATCAGC
          1 AGTTAACTGGCCACATCAGC

                     *           
       1107 TAGTTAACTTGCCACATCAGC
          1 -AGTTAACTGGCCACATCAGC

                
       1128 AGTT
          1 AGTT

       1132 CTGTTAAAAT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    4  0.17
  21   19  0.83

ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27


Consensus pattern (20 bp):   
AGTTAACTGGCCACATCAGC
Done.