Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00297.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1222
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30


Found at i:678 original size:7 final size:7

Alignment explanation


    Indices: 666--693  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

        656 CAGCACCAGT

                   
        666 GGCCTAC
          1 GGCCTAC

                   
        673 GGCCTAC
          1 GGCCTAC

                   
        680 GGCCTAC
          1 GGCCTAC

                   
        687 GGCCTAC
          1 GGCCTAC

        694 ACCCTCTTTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.14, C:0.43, G:0.29, T:0.14


Consensus pattern (7 bp):   
GGCCTAC

Done.