Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00307.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1486
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31


Found at i:541 original size:2 final size:2

Alignment explanation


    Indices: 534--580  Score: 85
    Period size: 2  Copynumber: 23.5  Consensus size: 2

        524 AACCATGAAA

                                                          *               
        534 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                   
        576 AC AC A
          1 AC AC A

        581 TATAAAATAA


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.51, C:0.47, G:0.00, T:0.02


Consensus pattern (2 bp):   
AC

Done.