Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00316.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5983
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:2643 original size:43 final size:43

Alignment explanation


    Indices: 2582--2671  Score: 180
    Period size: 43  Copynumber: 2.1  Consensus size: 43

       2572 GCATGCTTGC

                                                       
       2582 ATTCCATGATTGAAAGAAATTAGTAGAATATACATTGGAAGAT
          1 ATTCCATGATTGAAAGAAATTAGTAGAATATACATTGGAAGAT

                                                       
       2625 ATTCCATGATTGAAAGAAATTAGTAGAATATACATTGGAAGAT
          1 ATTCCATGATTGAAAGAAATTAGTAGAATATACATTGGAAGAT

                
       2668 ATTC
          1 ATTC

       2672 AGGATTTTTG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   47  1.00

ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31


Consensus pattern (43 bp):   
ATTCCATGATTGAAAGAAATTAGTAGAATATACATTGGAAGAT

Done.