Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00326.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2295
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26


Found at i:1330 original size:3 final size:3

Alignment explanation


    Indices: 1322--1374  Score: 81
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       1312 ATTCAGATTA

                                                     *                  
       1322 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CGC C-C GCAC CAC CAC
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC -CAC CAC CAC

                      
       1367 CAC CAC CA
          1 CAC CAC CA

       1375 GCAGTCACTT


Statistics
Matches: 47,  Mismatches: 1, Indels: 4
        0.90            0.02        0.08

Matches are distributed among these distances:
   2    1  0.02
   3   45  0.96
   4    1  0.02

ACGTcount: A:0.30, C:0.66, G:0.04, T:0.00


Consensus pattern (3 bp):   
CAC

Done.