Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00348.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2473
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:2327 original size:37 final size:37

Alignment explanation


    Indices: 2277--2351  Score: 150
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       2267 GTTAGGATAA

                                                 
       2277 TGAAGAAGTATTTTCAAGAATGATTAGGATGTAATCT
          1 TGAAGAAGTATTTTCAAGAATGATTAGGATGTAATCT

                                                 
       2314 TGAAGAAGTATTTTCAAGAATGATTAGGATGTAATCT
          1 TGAAGAAGTATTTTCAAGAATGATTAGGATGTAATCT

             
       2351 T
          1 T

       2352 AGTCATGTTT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.37, C:0.05, G:0.21, T:0.36


Consensus pattern (37 bp):   
TGAAGAAGTATTTTCAAGAATGATTAGGATGTAATCT
Done.