Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00353.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 391

Length: 652
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31


Found at i:470 original size:8 final size:8

Alignment explanation


    Indices: 459--489  Score: 62
    Period size: 8  Copynumber: 3.9  Consensus size: 8

        449 CTCTACAATC

                    
        459 TTTTTTCT
          1 TTTTTTCT

                    
        467 TTTTTTCT
          1 TTTTTTCT

                    
        475 TTTTTTCT
          1 TTTTTTCT

                   
        483 TTTTTTC
          1 TTTTTTC

        490 CTGAAATATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87


Consensus pattern (8 bp):   
TTTTTTCT

Done.