Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00362.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5837
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28


Found at i:78 original size:24 final size:24

Alignment explanation


    Indices: 26--85  Score: 63
    Period size: 24  Copynumber: 2.5  Consensus size: 24

         16 GAGCCTCCCC

                                    
         26 TCACCACTCACCACTCACCGCTCA
          1 TCACCACTCACCACTCACCGCTCA

            *                  *      
         50 CCACC-CTCCACCACTCCATCGC-CA
          1 TCACCACT-CACCACT-CACCGCTCA

                         
         74 TCACCA-TCACCA
          1 TCACCACTCACCA

         86 TCCACTCTTT


Statistics
Matches: 30,  Mismatches: 3, Indels: 7
        0.75            0.08        0.17

Matches are distributed among these distances:
  23    7  0.23
  24   18  0.60
  25    5  0.17

ACGTcount: A:0.25, C:0.57, G:0.03, T:0.15


Consensus pattern (24 bp):   
TCACCACTCACCACTCACCGCTCA
Done.