Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00372.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2918
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26


Found at i:373 original size:9 final size:9

Alignment explanation


    Indices: 359--384  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        349 CCAAAACCAT

                     
        359 CATCTCCAC
          1 CATCTCCAC

                     
        368 CATCTCCAC
          1 CATCTCCAC

                    
        377 CATCTCCA
          1 CATCTCCA

        385 AAACCACCAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.23, C:0.54, G:0.00, T:0.23


Consensus pattern (9 bp):   
CATCTCCAC
Done.