Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00382.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3337
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:2179 original size:34 final size:34

Alignment explanation


    Indices: 2136--2203  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       2126 CAACGCGTTT

                                              
       2136 CATGTTGACTGATGCATCATCATTGGGCTTTCTC
          1 CATGTTGACTGATGCATCATCATTGGGCTTTCTC

                                              
       2170 CATGTTGACTGATGCATCATCATTGGGCTTTCTC
          1 CATGTTGACTGATGCATCATCATTGGGCTTTCTC

       2204 AAGTTAGGAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38


Consensus pattern (34 bp):   
CATGTTGACTGATGCATCATCATTGGGCTTTCTC
Done.