Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00383.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2442
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31


Found at i:79 original size:6 final size:6

Alignment explanation


    Indices: 68--101  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

         58 AAAAAAGATA

                                                   
         68 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GGCA
          1 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GGCA

        102 GCAACTGAAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.32, C:0.18, G:0.35, T:0.15


Consensus pattern (6 bp):   
GGCAAT

Found at i:115 original size:6 final size:6

Alignment explanation


    Indices: 106--136  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         96 ATGGCAGCAA

                                                
        106 CTGAAG CTGAAG CTGAAG CTGAAG CTGAAG C
          1 CTGAAG CTGAAG CTGAAG CTGAAG CTGAAG C

        137 AGAGCAGAGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.32, C:0.19, G:0.32, T:0.16


Consensus pattern (6 bp):   
CTGAAG

Done.