Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00402.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2186
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:968 original size:38 final size:38

Alignment explanation


    Indices: 917--990  Score: 139
    Period size: 38  Copynumber: 1.9  Consensus size: 38

        907 ATATCTTTTG

                                           *      
        917 ATTGTTTAGATTTGTCTATTTAAGTACTACTGTTATAT
          1 ATTGTTTAGATTTGTCTATTTAAGTACTACTCTTATAT

                                                
        955 ATTGTTTAGATTTGTCTATTTAAGTACTACTCTTAT
          1 ATTGTTTAGATTTGTCTATTTAAGTACTACTCTTAT

        991 TCTATATAAC


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  38   35  1.00

ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53


Consensus pattern (38 bp):   
ATTGTTTAGATTTGTCTATTTAAGTACTACTCTTATAT
Done.