Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00409.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2976
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:2080 original size:18 final size:18

Alignment explanation


    Indices: 2053--2163  Score: 150
    Period size: 18  Copynumber: 6.2  Consensus size: 18

       2043 TACGACCGTT

                              
       2053 TACGGTACTATTCACGTA
          1 TACGGTACTATTCACGTA

                **      *     
       2071 TACGACACTATTTACGTA
          1 TACGGTACTATTCACGTA

                           *  
       2089 TACGGTACTATTCACATA
          1 TACGGTACTATTCACGTA

              *               
       2107 TATGGTACTATTCACGTA
          1 TACGGTACTATTCACGTA

              *            *  
       2125 TATGGTACTATTCACATA
          1 TACGGTACTATTCACGTA

                     *        
       2143 TACGGTACTGTTCACGTA
          1 TACGGTACTATTCACGTA

               
       2161 TAC
          1 TAC

       2164 AGTAGTTGGG


Statistics
Matches: 80,  Mismatches: 13, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   80  1.00

ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35


Consensus pattern (18 bp):   
TACGGTACTATTCACGTA

Done.