Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00436.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3129
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32


Found at i:1426 original size:245 final size:246

Alignment explanation


    Indices: 990--1488  Score: 835
    Period size: 245  Copynumber: 2.0  Consensus size: 246

        980 GAATCCATGC

                *                 *                                          
        990 TTACTATTCAAAATTTAGCTTCGGACAGAGCTGTGGTTACTCAACAAGGCAGCTTCTTGGTCTCA
          1 TTACCATTCAAAATTTAGCTTCAGACAGAGCTGTGGTTACTCAACAAGGCAGCTTCTTGGTCTCA

                           *      *  *                                       
       1055 AATCATAGAAATAGGCAATAATGTCCTTTTTGAATGAAGATAAAATAGTAGAAGATTAAACTATA
         66 AATCATAGAAATAGGAAATAATCTCATTTTTGAATGAAGATAAAATAGTAGAAGATTAAACTATA

                                                                           * 
       1120 GAAACTCCACTGGCAAAATGTTGAAATAAAACTGGAAAGATCTATAGCTATTTGTCATCACTCGA
        131 GAAACTCCACTGGCAAAATGTTGAAATAAAACTGGAAAGATCTATAGCTATTTGTCATCACTCAA

                          *                               *       
       1185 GGAACAACTTCTTGTCAATATGATAAG-TATTTG-GTCTGC-TCTTGTCACTAA
        196 GGAACAACTTCTTGACAATATGAT-AGTTATTTGCG-CTGCAT-TTATCACTAA

                                                                             
       1236 TTACCATTCAAAATTTAGCTTCAGACAGAGCTGTGGTTACTCAACAAGGCAGCTTCTTGGTCTCA
          1 TTACCATTCAAAATTTAGCTTCAGACAGAGCTGTGGTTACTCAACAAGGCAGCTTCTTGGTCTCA

                                *                                           *
       1301 AATCAT-GAAATAGGAAATATTCTCATTTTTGAATGAAGATAAAATAGTAGAAGATTAAACTATC
         66 AATCATAGAAATAGGAAATAATCTCATTTTTGAATGAAGATAAAATAGTAGAAGATTAAACTATA

                                          *                                  
       1365 GAAACTCCACTGGCAAAATGTTGAAATAAATCTGGAAAGATCTATAGCTATTTGTCATCACTCAA
        131 GAAACTCCACTGGCAAAATGTTGAAATAAAACTGGAAAGATCTATAGCTATTTGTCATCACTCAA

                                                           *   
       1430 GGAACAACTTCTTGACAATATGATAGTTATTTGCGCTGCATTTATCATTAA
        196 GGAACAACTTCTTGACAATATGATAGTTATTTGCGCTGCATTTATCACTAA

                    
       1481 TTACCATT
          1 TTACCATT

       1489 GTGATCTTCA


Statistics
Matches: 238,  Mismatches: 12, Indels: 7
        0.93            0.05        0.03

Matches are distributed among these distances:
 244    2  0.01
 245  165  0.69
 246   71  0.30

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31


Consensus pattern (246 bp):   
TTACCATTCAAAATTTAGCTTCAGACAGAGCTGTGGTTACTCAACAAGGCAGCTTCTTGGTCTCA
AATCATAGAAATAGGAAATAATCTCATTTTTGAATGAAGATAAAATAGTAGAAGATTAAACTATA
GAAACTCCACTGGCAAAATGTTGAAATAAAACTGGAAAGATCTATAGCTATTTGTCATCACTCAA
GGAACAACTTCTTGACAATATGATAGTTATTTGCGCTGCATTTATCACTAA
Done.