Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00437.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2439
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:2339 original size:12 final size:12

Alignment explanation


    Indices: 2322--2356  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

       2312 GAAAAGAAGC

                      * 
       2322 TATATATATAGA
          1 TATATATATACA

                    *   
       2334 TATATATACACA
          1 TATATATATACA

                       
       2346 TATATATATAC
          1 TATATATATAC

       2357 TGTTGGATCA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.49, C:0.09, G:0.03, T:0.40


Consensus pattern (12 bp):   
TATATATATACA
Done.