Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00452.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2267
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:1443 original size:105 final size:105

Alignment explanation


    Indices: 1261--1455  Score: 300
    Period size: 105  Copynumber: 1.9  Consensus size: 105

       1251 ACAGCAACAA

                       *                             *                       
       1261 GTTGATCTATTTGCTTCCCAGCCTGCCATTACTCCTGCAGCCTCTCCAACTGTTGACCTATTTGC
          1 GTTGATCTATTCGCTTCCCAGCCTGCCATTACTCCTGCAGCATCTCCAACTGTTGACCTATTTGC

            **   *                                  
       1326 TGCCAGTGATCCAGTTGTGCAACCACACATAAAGGGACAG
         66 CACCACTGATCCAGTTGTGCAACCACACATAAAGGGACAG

                  *          *   *                                     *   * 
       1366 GTTGATTTATTCGCTTCTCAGGCTGCCATTACTCCTGCAGCATCTCCAACTGTTGACCTCTTTTC
          1 GTTGATCTATTCGCTTCCCAGCCTGCCATTACTCCTGCAGCATCTCCAACTGTTGACCTATTTGC

                                     
       1431 CACCACTGATCCAGTTGTGCAACCA
         66 CACCACTGATCCAGTTGTGCAACCA

       1456 GCCATGGCAG


Statistics
Matches: 80,  Mismatches: 10, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
 105   80  1.00

ACGTcount: A:0.21, C:0.31, G:0.17, T:0.31


Consensus pattern (105 bp):   
GTTGATCTATTCGCTTCCCAGCCTGCCATTACTCCTGCAGCATCTCCAACTGTTGACCTATTTGC
CACCACTGATCCAGTTGTGCAACCACACATAAAGGGACAG

Done.