Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00454.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4941
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31


Found at i:4719 original size:13 final size:14

Alignment explanation


    Indices: 4692--4721  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       4682 AACAAGGTTC

                          
       4692 TTTTGTTCAATTTT
          1 TTTTGTTCAATTTT

                    *     
       4706 TTTTGTTCCATTTT
          1 TTTTGTTCAATTTT

              
       4720 TT
          1 TT

       4722 GCATGTAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.10, C:0.10, G:0.07, T:0.73


Consensus pattern (14 bp):   
TTTTGTTCAATTTT
Done.