Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00467.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 357

Length: 596
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23


Found at i:365 original size:16 final size:16

Alignment explanation


    Indices: 344--376  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        334 AGACAGTAAG

                   *        
        344 CAAAGTGCGAGCCTGT
          1 CAAAGTGAGAGCCTGT

                            
        360 CAAAGTGAGAGCCTGT
          1 CAAAGTGAGAGCCTGT

             
        376 C
          1 C

        377 GAATTGCAAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.27, C:0.24, G:0.30, T:0.18


Consensus pattern (16 bp):   
CAAAGTGAGAGCCTGT

Found at i:431 original size:44 final size:42

Alignment explanation


    Indices: 381--479  Score: 117
    Period size: 44  Copynumber: 2.3  Consensus size: 42

        371 CCTGTCGAAT

                             *                      **  
        381 TGCAAGCCAAAGAGGCGGACAATCTAAATGCAAGCATGAGTGGG
          1 TGCAAGCCAAA-AGGCGAACAATCTAAATGCAAGCATGA-AAGG

                                **             *       
        425 TGCAAGCCGAAAAGGCGAACGGTCTAAATGCAAGCTTGAAAGG
          1 TGCAAGCC-AAAAGGCGAACAATCTAAATGCAAGCATGAAAGG

                        
        468 TGCAAGCCAAAA
          1 TGCAAGCCAAAA

        480 ATGGCAGACT


Statistics
Matches: 48,  Mismatches: 6, Indels: 4
        0.83            0.10        0.07

Matches are distributed among these distances:
  42    4  0.08
  43   10  0.21
  44   31  0.65
  45    3  0.06

ACGTcount: A:0.38, C:0.19, G:0.29, T:0.13


Consensus pattern (42 bp):   
TGCAAGCCAAAAGGCGAACAATCTAAATGCAAGCATGAAAGG
Done.