Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00473.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:1052 original size:94 final size:94

Alignment explanation


    Indices: 891--1078  Score: 349
    Period size: 94  Copynumber: 2.0  Consensus size: 94

        881 ACAAGATGCA

                                                                             
        891 AAGATACTTACTAGATTTTCTAATGCTACTACTGGTAATATCTTGTGAAATATGCATATTCATCT
          1 AAGATACTTACTAGATTTTCTAATGCTACTACTGGTAATATCTTGTGAAATATGCATATTCATCT

                                         
        956 TATGTTTATTCAGTTGACACCCCATGTTC
         66 TATGTTTATTCAGTTGACACCCCATGTTC

                     *                                  *                    
        985 AAGATACTTGCTAGATTTTCTAATGCTACTACTGGTAATATCTTTTGAAATATGCATATTCATCT
          1 AAGATACTTACTAGATTTTCTAATGCTACTACTGGTAATATCTTGTGAAATATGCATATTCATCT

                                 *       
       1050 TATGTTTATTCAGTTGACACCTCATGTTC
         66 TATGTTTATTCAGTTGACACCCCATGTTC

       1079 GACGTTATTA


Statistics
Matches: 91,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  94   91  1.00

ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41


Consensus pattern (94 bp):   
AAGATACTTACTAGATTTTCTAATGCTACTACTGGTAATATCTTGTGAAATATGCATATTCATCT
TATGTTTATTCAGTTGACACCCCATGTTC
Done.