Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00481.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 902

Length: 1504
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30


Found at i:1267 original size:2 final size:2

Alignment explanation


    Indices: 1246--1305  Score: 93
    Period size: 2  Copynumber: 29.5  Consensus size: 2

       1236 GGTTTGTGAA

                         *     *                                           
       1246 TG TG ATG TG AG TG AG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG -TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

                                     
       1289 TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG T

       1306 TTTAAGCCCT


Statistics
Matches: 53,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
   2   51  0.96
   3    2  0.04

ACGTcount: A:0.05, C:0.00, G:0.48, T:0.47


Consensus pattern (2 bp):   
TG

Done.