Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00491.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3584
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:3479 original size:14 final size:14

Alignment explanation


    Indices: 3446--3481  Score: 54
    Period size: 14  Copynumber: 2.6  Consensus size: 14

       3436 TTTCTGGTTC

                 *        
       3446 ATATACATTTATAT
          1 ATATATATTTATAT

                          
       3460 ATATATATTTATAT
          1 ATATATATTTATAT

            *       
       3474 TTATATAT
          1 ATATATAT

       3482 ATAGGTAATT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  14   20  1.00

ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56


Consensus pattern (14 bp):   
ATATATATTTATAT
Done.