Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00498.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 782

Length: 1304
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26


Found at i:393 original size:60 final size:60

Alignment explanation


    Indices: 295--421  Score: 193
    Period size: 60  Copynumber: 2.1  Consensus size: 60

        285 AGGAAAAGGG

                                                                       *
        295 AAGCCAGCGGGTGGCACTCATGTGAACGTTGGGCGCAAAGGAGTTGGAGTGAACACGGGT
          1 AAGCCAGCGGGTGGCACTCATGTGAACGTTGGGCGCAAAGGAGTTGGAGTGAACACGGGA

                   *                  *                     *        *   
        355 AAGCCAGGGGGTGGCACTCATGTGAATGTTGGAG-GCAAAGGAGTTGGGGTGAACACTGGA
          1 AAGCCAGCGGGTGGCACTCATGTGAACGTTGG-GCGCAAAGGAGTTGGAGTGAACACGGGA

                   
        415 AAGCCAG
          1 AAGCCAG

        422 TAAATGTTAA


Statistics
Matches: 61,  Mismatches: 5, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  60   60  0.98
  61    1  0.02

ACGTcount: A:0.27, C:0.17, G:0.40, T:0.17


Consensus pattern (60 bp):   
AAGCCAGCGGGTGGCACTCATGTGAACGTTGGGCGCAAAGGAGTTGGAGTGAACACGGGA
Done.