Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00498.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 825

Length: 1376
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25


Found at i:393 original size:60 final size:60

Alignment explanation


    Indices: 295--500  Score: 324
    Period size: 60  Copynumber: 3.4  Consensus size: 60

        285 AGGAAAAGGG

                   *                                                    *
        295 AAGCCAGCGGGTGGCACTCATGTGAACGTTGG-GCGCAAAGGAGTTGGAGTGAACACGGGT
          1 AAGCCAGGGGGTGGCACTCATGTGAACGTTGGAG-GCAAAGGAGTTGGAGTGAACACGGGA

                                      *                    *        *   
        355 AAGCCAGGGGGTGGCACTCATGTGAATGTTGGAGGCAAAGGAGTTGGGGTGAACACTGGA
          1 AAGCCAGGGGGTGGCACTCATGTGAACGTTGGAGGCAAAGGAGTTGGAGTGAACACGGGA

                    *        *                                          
        415 AAGCCAGGAGGTGGCACCCATGTGAACGTTGGAGGCAAAGGAGTTGGAGTGAACACGGGA
          1 AAGCCAGGGGGTGGCACTCATGTGAACGTTGGAGGCAAAGGAGTTGGAGTGAACACGGGA

                              *       
        475 AAGCCAGGGGGTGGCACTGATGTGAA
          1 AAGCCAGGGGGTGGCACTCATGTGAA

        501 TGATCCAGAC


Statistics
Matches: 132,  Mismatches: 13, Indels: 2
        0.90            0.09        0.01

Matches are distributed among these distances:
  60  131  0.99
  61    1  0.01

ACGTcount: A:0.27, C:0.16, G:0.41, T:0.16


Consensus pattern (60 bp):   
AAGCCAGGGGGTGGCACTCATGTGAACGTTGGAGGCAAAGGAGTTGGAGTGAACACGGGA
Done.