Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00519.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 581

Length: 969
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.26


Found at i:794 original size:23 final size:23

Alignment explanation


    Indices: 766--809  Score: 79
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        756 CAGAAGAAAG

                                   
        766 AAGCGTGTCAAAAGACAGAGAGA
          1 AAGCGTGTCAAAAGACAGAGAGA

                    *            
        789 AAGCGTGTTAAAAGACAGAGA
          1 AAGCGTGTCAAAAGACAGAGA

        810 ATAGTATAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.48, C:0.11, G:0.30, T:0.11


Consensus pattern (23 bp):   
AAGCGTGTCAAAAGACAGAGAGA

Done.