Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00519.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5323
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30


Found at i:4485 original size:23 final size:23

Alignment explanation


    Indices: 4459--4503  Score: 81
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       4449 GACAGATTTG

                                   
       4459 CCATTTTTCAACACAATCTTCTT
          1 CCATTTTTCAACACAATCTTCTT

                        *         
       4482 CCATTTTTCAACGCAATCTTCT
          1 CCATTTTTCAACACAATCTTCT

       4504 CCTTTCTCTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.24, C:0.31, G:0.02, T:0.42


Consensus pattern (23 bp):   
CCATTTTTCAACACAATCTTCTT

Found at i:5148 original size:23 final size:23

Alignment explanation


    Indices: 5120--5163  Score: 79
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       5110 CAGAAGAAAG

                                   
       5120 AAGCGTGTCAAAAGACAGAGAGA
          1 AAGCGTGTCAAAAGACAGAGAGA

                    *            
       5143 AAGCGTGTTAAAAGACAGAGA
          1 AAGCGTGTCAAAAGACAGAGA

       5164 ATAGTATAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.48, C:0.11, G:0.30, T:0.11


Consensus pattern (23 bp):   
AAGCGTGTCAAAAGACAGAGAGA

Done.