Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00534.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2808
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28


Found at i:11 original size:6 final size:6

Alignment explanation


    Indices: 1--38  Score: 58
    Period size: 6  Copynumber: 6.3  Consensus size: 6

                                          *      *      
          1 AGGGAG AGGGAG AGGGAG AGGGAG AGAGAG AGAGAG AG
          1 AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AGGGAG AG

         39 AAAGGAAAAG


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   31  1.00

ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00


Consensus pattern (6 bp):   
AGGGAG

Done.