Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00541.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1922
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27


Found at i:1872 original size:8 final size:8

Alignment explanation


    Indices: 1859--1885  Score: 54
    Period size: 8  Copynumber: 3.4  Consensus size: 8

       1849 TATAGACTCG

                    
       1859 TTGTGATC
          1 TTGTGATC

                    
       1867 TTGTGATC
          1 TTGTGATC

                    
       1875 TTGTGATC
          1 TTGTGATC

               
       1883 TTG
          1 TTG

       1886 AAATTATATA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.11, C:0.11, G:0.26, T:0.52


Consensus pattern (8 bp):   
TTGTGATC
Done.