Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00553.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2171
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35


Found at i:2111 original size:121 final size:121

Alignment explanation


    Indices: 1897--2132  Score: 445
    Period size: 121  Copynumber: 2.0  Consensus size: 121

       1887 GACGTTCATA

                                                                             
       1897 AGAATTGGATTACCTTGAAATCGCCCCCTTGCGTACTGATTCCTACATGTCAGCTAGGTTTGGCA
          1 AGAATTGGATTACCTTGAAATCGCCCCCTTGCGTACTGATTCCTACATGTCAGCTAGGTTTGGCA

                                                                    
       1962 TGACATAGTACTGAGACAAATTAGATTTACCCTGAAATCAGTCCAAATATACCATG
         66 TGACATAGTACTGAGACAAATTAGATTTACCCTGAAATCAGTCCAAATATACCATG

                                      *                       *              
       2018 AGAATTGGATTACCTTGAAATCGCCCTCTTGCGTACTGATTCCTACATGTTAGCTAGGTTTGGCA
          1 AGAATTGGATTACCTTGAAATCGCCCCCTTGCGTACTGATTCCTACATGTCAGCTAGGTTTGGCA

                         *                                    
       2083 TGACATAGTACTGTGACAAATTAGATTTACCCTGAAATCAGTCCAAATAT
         66 TGACATAGTACTGAGACAAATTAGATTTACCCTGAAATCAGTCCAAATAT

       2133 GTGACGTAAA


Statistics
Matches: 112,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 121  112  1.00

ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Consensus pattern (121 bp):   
AGAATTGGATTACCTTGAAATCGCCCCCTTGCGTACTGATTCCTACATGTCAGCTAGGTTTGGCA
TGACATAGTACTGAGACAAATTAGATTTACCCTGAAATCAGTCCAAATATACCATG
Done.