Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01012.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2189
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:1609 original size:5 final size:5

Alignment explanation


    Indices: 1599--1633  Score: 61
    Period size: 5  Copynumber: 6.8  Consensus size: 5

       1589 GCTTAGCTAT

                                                     
       1599 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAAG AAAA
          1 AAAAG AAAAG AAAAG AAAAG AAAAG -AAAAG AAAA

       1634 AAGATGATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   5   24  0.83
   6    5  0.17

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (5 bp):   
AAAAG

Found at i:1715 original size:12 final size:12

Alignment explanation


    Indices: 1700--1727  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       1690 GTGGGGGGCA

                        
       1700 AAGTGCATGTGC
          1 AAGTGCATGTGC

                        
       1712 AAGTGCATGTGC
          1 AAGTGCATGTGC

                
       1724 AAGT
          1 AAGT

       1728 TCAAGTTCAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25


Consensus pattern (12 bp):   
AAGTGCATGTGC
Done.