Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00563.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2740
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30


Found at i:307 original size:13 final size:13

Alignment explanation


    Indices: 289--314  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        279 TCTTTTTTTC

                         
        289 CTCGTTTATAGTT
          1 CTCGTTTATAGTT

                         
        302 CTCGTTTATAGTT
          1 CTCGTTTATAGTT

        315 AGACTTCATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54


Consensus pattern (13 bp):   
CTCGTTTATAGTT
Done.