Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00566.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 832

Length: 1387
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34


Found at i:757 original size:16 final size:16

Alignment explanation


    Indices: 736--769  Score: 59
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        726 TTGTTGGATA

                    *       
        736 TGAATGTGTTTAGTAC
          1 TGAATGTGCTTAGTAC

                            
        752 TGAATGTGCTTAGTAC
          1 TGAATGTGCTTAGTAC

              
        768 TG
          1 TG

        770 TTATCAGTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.24, C:0.09, G:0.26, T:0.41


Consensus pattern (16 bp):   
TGAATGTGCTTAGTAC
Done.