Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00569.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5744
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:2440 original size:20 final size:20

Alignment explanation


    Indices: 2415--2454  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       2405 CTCACTACTT

                                
       2415 TGACAAAAGGGACGGGGCTA
          1 TGACAAAAGGGACGGGGCTA

                                
       2435 TGACAAAAGGGACGGGGCTA
          1 TGACAAAAGGGACGGGGCTA

       2455 GTAAAAGCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.35, C:0.15, G:0.40, T:0.10


Consensus pattern (20 bp):   
TGACAAAAGGGACGGGGCTA
Done.