Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00583.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1591
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27


Found at i:220 original size:14 final size:15

Alignment explanation


    Indices: 198--231  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        188 TATCAAAATC

                *          
        198 AAAATAAAAG-AGAG
          1 AAAAAAAAAGAAGAG

                           
        212 AAAAAAAAAGAAGAG
          1 AAAAAAAAAGAAGAG

                 
        227 AAAAA
          1 AAAAA

        232 GGCACCCTCG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14    9  0.50
  15    9  0.50

ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03


Consensus pattern (15 bp):   
AAAAAAAAAGAAGAG

Done.