Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01018.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2708
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:1606 original size:16 final size:16

Alignment explanation


    Indices: 1585--1637  Score: 63
    Period size: 16  Copynumber: 3.3  Consensus size: 16

       1575 TAGAATGGAA

                             
       1585 AGAAAATTGAGAAGA-T
          1 AGAAAATTGA-AAGAGT

                            
       1601 AGAAAATTGAAAGAGT
          1 AGAAAATTGAAAGAGT

                  * *     * 
       1617 AGAAAAATAAAAGAAT
          1 AGAAAATTGAAAGAGT

                 
       1633 AGAAA
          1 AGAAA

       1638 TATTTTTTTC


Statistics
Matches: 33,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  15    4  0.12
  16   29  0.88

ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15


Consensus pattern (16 bp):   
AGAAAATTGAAAGAGT
Done.