Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00591.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:1981 original size:96 final size:96

Alignment explanation


    Indices: 1817--2009  Score: 305
    Period size: 96  Copynumber: 2.0  Consensus size: 96

       1807 TCAAGTGTAG

                 *            *              *                       *       
       1817 TGAAGGTGAAAACTTAGCTATGGAACCATCAGTTATTGAAAAGGAAGGGTATCTTATGGTCCAAC
          1 TGAAGATGAAAACTTAGCAATGGAACCATCAGTCATTGAAAAGGAAGGGTATCTTATAGTCCAAC

                *                          
       1882 CTAGTCGACAGGGAAGTTACATTCCTGATAA
         66 CTAGGCGACAGGGAAGTTACATTCCTGATAA

                           *              *                                  
       1913 TGAAGATGAAAACTTTGCAATGGAACCATCGGTCATTGAAAAGGAAGGGTATCTTATAGTCCAAC
          1 TGAAGATGAAAACTTAGCAATGGAACCATCAGTCATTGAAAAGGAAGGGTATCTTATAGTCCAAC

                               *       *   
       1978 CTAGGCGACAGGGAAGTTATATTCCTGGTAA
         66 CTAGGCGACAGGGAAGTTACATTCCTGATAA

             
       2009 T
          1 T

       2010 CTTGGCTCAT


Statistics
Matches: 88,  Mismatches: 9, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  96   88  1.00

ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26


Consensus pattern (96 bp):   
TGAAGATGAAAACTTAGCAATGGAACCATCAGTCATTGAAAAGGAAGGGTATCTTATAGTCCAAC
CTAGGCGACAGGGAAGTTACATTCCTGATAA
Done.