Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01020.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 222

Length: 371
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35


Found at i:350 original size:34 final size:34

Alignment explanation


    Indices: 307--371  Score: 112
    Period size: 34  Copynumber: 1.9  Consensus size: 34

        297 AGTTTGTATG

                           *                  
        307 TTAATCTTGATATATGGCCTAATTGGTGCTTAGT
          1 TTAATCTTGATATATCGCCTAATTGGTGCTTAGT

                                 *         
        341 TTAATCTTGATATATCGCCTAGTTGGTGCTT
          1 TTAATCTTGATATATCGCCTAATTGGTGCTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  34   29  1.00

ACGTcount: A:0.22, C:0.14, G:0.20, T:0.45


Consensus pattern (34 bp):   
TTAATCTTGATATATCGCCTAATTGGTGCTTAGT
Done.