Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01021.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4434
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:21 original size:6 final size:6

Alignment explanation


    Indices: 10--39  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

          1 ATTCAAGCT

                                              
         10 AAGGCA AAGGCA AAGGCA AAGGCA AAGGCA
          1 AAGGCA AAGGCA AAGGCA AAGGCA AAGGCA

         40 GTCACAGCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.50, C:0.17, G:0.33, T:0.00


Consensus pattern (6 bp):   
AAGGCA

Found at i:130 original size:3 final size:3

Alignment explanation


    Indices: 122--147  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        112 TTTTTGCTTG

                                              
        122 TTC TTC TTC TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TT

        148 ATTTCTTTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTC

Done.