Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00641.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1985
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:716 original size:8 final size:8

Alignment explanation


    Indices: 705--733  Score: 58
    Period size: 8  Copynumber: 3.6  Consensus size: 8

        695 CTTGCTTTCC

                    
        705 TTTTTCTT
          1 TTTTTCTT

                    
        713 TTTTTCTT
          1 TTTTTCTT

                    
        721 TTTTTCTT
          1 TTTTTCTT

                 
        729 TTTTT
          1 TTTTT

        734 TTTCAATTTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   21  1.00

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (8 bp):   
TTTTTCTT
Done.