Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g00650.M1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9035
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Found at i:5412 original size:411 final size:411
Alignment explanation
Indices: 4650--5479 Score: 1437
Period size: 411 Copynumber: 2.0 Consensus size: 411
4640 AAATATGAGG
* *
4650 ACCTTCAGGGTAAGTTTTATAGGTTGGCAGAACGAAATGAAATGCTGGAACAATCCTTAATGGAA
1 ACCTTCAGGGCAAGATTTATAGGTTGGCAGAACGAAATGAAATGCTGGAACAATCCTTAATGGAA
* *
4715 AGGAACCACTTGTTGCAAAAATGGGAGGAGCTTTTGGATGGAATCGACATGCCCTCACAAATGCA
66 AGGAACCACTTGGTGCAAAAATGGGAGGAACTTTTGGATGGAATCGACATGCCCTCACAAATGCA
*
4780 ATCCATGGAACCTGAAGAAAAGATTGAATGGTTAGGAAGGGCGTTTACAGAGGCTAATCATGAAA
131 ATCCATGGAACCTGAAGAAAAGATTGAATGGTTAGGAAGGGCGATTACAGAGGCTAATCATGAAA
*
4845 GAAATTCTTTGCAGAAGAAGATTGATAATCTTGAAAATTATTATAGGTCAGTAGCTGCTGAGTTG
196 GAAATTCTTTGCAGAAGAAGATTGATAATCTTGAAAATTATTATAGGTCACTAGCTGCTGAGTTG
* * * *
4910 GAGGGGTCAGAAAAGAGAGTAGCTGATCTTGAGGCAGATCTTCAATCGGTTACGCTTGAGAGGGA
261 GAGGAGTCAGAAAAGAGAGTAGCTGATCTTGAGGCAGACCTTCAATCAGTTACACTTGAGAGGGA
*
4975 TCAACTTTCTGAAAAATTGGAGACTATGACTTCTAATCATCATAA-TCTTTCGGCGAAGGCAGCT
326 TCAACTTTCTGAAAAATTGGAGACTATGACTTCTAATCATCATAACT-TTTCGGCAAAGGCAGCT
5039 CAATTTGAAGTTGAGAATAAAA
390 CAATTTGAAGTTGAGAATAAAA
* * * *
5061 ACCTTCAGGGCAAGATTTATAGTTTGGTAGAACGAAATGAATTGTTGGAACAATCCTTAATGGAA
1 ACCTTCAGGGCAAGATTTATAGGTTGGCAGAACGAAATGAAATGCTGGAACAATCCTTAATGGAA
* *
5126 AGGAGCCACTTGGTGCAAAAATGGGAGGAACTTTTGGATGGAATCGACATGCCTTCACAAATGCA
66 AGGAACCACTTGGTGCAAAAATGGGAGGAACTTTTGGATGGAATCGACATGCCCTCACAAATGCA
*
5191 ATCCATGGAACCTGAAGAAAAGATTGAATGGTTAGGGAGGGCGATTACAGAGGCTAATCATGAAA
131 ATCCATGGAACCTGAAGAAAAGATTGAATGGTTAGGAAGGGCGATTACAGAGGCTAATCATGAAA
* *
5256 GAAATTCTTTGCAGAAGAAGATTGATAATCTTGAAAATTATTATGGGTCACTAGCTGCTGATTTG
196 GAAATTCTTTGCAGAAGAAGATTGATAATCTTGAAAATTATTATAGGTCACTAGCTGCTGAGTTG
5321 GAGGAGTCAGAAAAGAGAGTAGCTGATCTTGAGGCAGACCTTCAATCAGTTACACTTGAGAGGGA
261 GAGGAGTCAGAAAAGAGAGTAGCTGATCTTGAGGCAGACCTTCAATCAGTTACACTTGAGAGGGA
*
5386 TCAACTTTCTGAAAAATTGGAGACTATGACTTCTAATCATCATAACTTTTTGGCAAAGGCAGCTC
326 TCAACTTTCTGAAAAATTGGAGACTATGACTTCTAATCATCATAACTTTTCGGCAAAGGCAGCTC
* *
5451 ATTTTGAAGTTGAGAATGAAA
391 AATTTGAAGTTGAGAATAAAA
5472 ACCTTCAG
1 ACCTTCAG
5480 ATTAGAGTCA
Statistics
Matches: 395, Mismatches: 23, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
411 394 1.00
412 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.26
Consensus pattern (411 bp):
ACCTTCAGGGCAAGATTTATAGGTTGGCAGAACGAAATGAAATGCTGGAACAATCCTTAATGGAA
AGGAACCACTTGGTGCAAAAATGGGAGGAACTTTTGGATGGAATCGACATGCCCTCACAAATGCA
ATCCATGGAACCTGAAGAAAAGATTGAATGGTTAGGAAGGGCGATTACAGAGGCTAATCATGAAA
GAAATTCTTTGCAGAAGAAGATTGATAATCTTGAAAATTATTATAGGTCACTAGCTGCTGAGTTG
GAGGAGTCAGAAAAGAGAGTAGCTGATCTTGAGGCAGACCTTCAATCAGTTACACTTGAGAGGGA
TCAACTTTCTGAAAAATTGGAGACTATGACTTCTAATCATCATAACTTTTCGGCAAAGGCAGCTC
AATTTGAAGTTGAGAATAAAA
Done.