Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00659.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2069
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1895 original size:82 final size:82

Alignment explanation


    Indices: 1756--1919  Score: 301
    Period size: 82  Copynumber: 2.0  Consensus size: 82

       1746 CTGGTGCCCT

                                                                *            
       1756 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTTGAGTTGAATTTG
          1 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG

                             
       1821 ACAAAAAGGAAGCAAGA
         66 ACAAAAAGGAAGCAAGA

                                            *    *                           
       1838 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCTTGTTTGCCTACTTCATATTCGAGTTGAATTTG
          1 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG

                             
       1903 ACAAAAAGGAAGCAAGA
         66 ACAAAAAGGAAGCAAGA

       1920 GACCGAGTTT


Statistics
Matches: 79,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  82   79  1.00

ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25


Consensus pattern (82 bp):   
ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG
ACAAAAAGGAAGCAAGA
Done.