Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00659.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3622
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:3448 original size:82 final size:82

Alignment explanation


    Indices: 3309--3472  Score: 301
    Period size: 82  Copynumber: 2.0  Consensus size: 82

       3299 CTGGTGCCCT

                                                                *            
       3309 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTTGAGTTGAATTTG
          1 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG

                             
       3374 ACAAAAAGGAAGCAAGA
         66 ACAAAAAGGAAGCAAGA

                                            *    *                           
       3391 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCTTGTTTGCCTACTTCATATTCGAGTTGAATTTG
          1 ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG

                             
       3456 ACAAAAAGGAAGCAAGA
         66 ACAAAAAGGAAGCAAGA

       3473 GACCGAGTTT


Statistics
Matches: 79,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  82   79  1.00

ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25


Consensus pattern (82 bp):   
ATTTGCAAAGCATCAGCAGAACCCACCCAGTCGTGTTCGCCTACTTCATATTCGAGTTGAATTTG
ACAAAAAGGAAGCAAGA
Done.