Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00671.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:49 original size:5 final size:5

Alignment explanation


    Indices: 39--65  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

         29 CTACACTTAC

                                            
         39 TCTGA TCTGA TCTGA TCTGA TCTGA TC
          1 TCTGA TCTGA TCTGA TCTGA TCTGA TC

         66 AATTCAATCT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41


Consensus pattern (5 bp):   
TCTGA

Done.