Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00672.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2366
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Found at i:515 original size:6 final size:6

Alignment explanation


    Indices: 468--502  Score: 61
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        458 AGCAAAAGAA

                                                    
        468 TTTTCT TTTTCT TTTTCT TTTTCTT TTTTCT TTTT
          1 TTTTCT TTTTCT TTTTCT TTTTC-T TTTTCT TTTT

        503 AAATTTTATT


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   6   22  0.79
   7    6  0.21

ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86


Consensus pattern (6 bp):   
TTTTCT
Done.