Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00673.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4670
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30


Found at i:2902 original size:64 final size:64

Alignment explanation


    Indices: 2830--2953  Score: 203
    Period size: 64  Copynumber: 1.9  Consensus size: 64

       2820 TATCTGTTTC

                                               *        **  *               
       2830 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTTGGGATGAGTGGAGCTATGTTGCTCCTGG
          1 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTATGTTGCTCCTGG

                                    *                                   
       2894 GAATGATGAAAAGGTTTAAATGTTTCAATATTGTTGGGGATGAGAAGAACTATGTTGCTC
          1 GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTATGTTGCTC

       2954 TGACTCTTCA


Statistics
Matches: 55,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  64   55  1.00

ACGTcount: A:0.30, C:0.08, G:0.28, T:0.34


Consensus pattern (64 bp):   
GAATGATGAAAAGGTTTAAATGTTCCAATATTGTTGGGGATGAGAAGAACTATGTTGCTCCTGG
Done.