Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00697.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33


Found at i:552 original size:52 final size:52

Alignment explanation


    Indices: 474--588  Score: 171
    Period size: 52  Copynumber: 2.2  Consensus size: 52

        464 ATGCTTACGT

                            * *                                  
        474 CTATCAAAGCTCTATTGCGTTACAATGAATCAAACATA-CTGTTATTATTTCA
          1 CTATCAAAGCTCTATTACATTACAATGAATCAAACA-AGCTGTTATTATTTCA

                                                                 
        526 CTATC-AAGACTCTATTACATTACAATGAATCAAACAAGCTGTTATTATTTCA
          1 CTATCAAAG-CTCTATTACATTACAATGAATCAAACAAGCTGTTATTATTTCA

              *        
        578 CTGTCAAAGCT
          1 CTATCAAAGCT

        589 TAATGTATGA


Statistics
Matches: 57,  Mismatches: 3, Indels: 6
        0.86            0.05        0.09

Matches are distributed among these distances:
  51    4  0.07
  52   50  0.88
  53    3  0.05

ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35


Consensus pattern (52 bp):   
CTATCAAAGCTCTATTACATTACAATGAATCAAACAAGCTGTTATTATTTCA
Done.