Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00728.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5570
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32


Found at i:1518 original size:53 final size:53

Alignment explanation


    Indices: 1437--1587  Score: 200
    Period size: 53  Copynumber: 2.8  Consensus size: 53

       1427 CTTACACGGT

                                    *                                
       1437 TCACATATCATACCGAA-GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
          1 TCACAT-T-ATACC-AATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA

                                                        *        
       1492 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
          1 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA

                         *                         *    
       1545 TCACATT-TCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
          1 TCACATTAT-ACCAATGCCATAGCCCAGCTATGGTCTTATACGG

       1588 GCACACTTGT


Statistics
Matches: 89,  Mismatches: 4, Indels: 8
        0.88            0.04        0.08

Matches are distributed among these distances:
  52    4  0.04
  53   78  0.88
  54    1  0.01
  55    6  0.07

ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26


Consensus pattern (53 bp):   
TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Done.