Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00735.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2753
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32


Found at i:338 original size:7 final size:7

Alignment explanation


    Indices: 321--353  Score: 50
    Period size: 7  Copynumber: 4.7  Consensus size: 7

        311 TCTCTCTCTC

                   
        321 TTTTTTA
          1 TTTTTTA

                   
        328 -TTTTTA
          1 TTTTTTA

                   
        334 TTTTTTA
          1 TTTTTTA

                    
        341 TTTTTTTA
          1 -TTTTTTA

                 
        349 TTTTT
          1 TTTTT

        354 ATCCTGCTAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
   6    6  0.25
   7   11  0.46
   8    7  0.29

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTTTA
Done.